Journal of

GEOsciences

  (Formerly Journal of the Czech Geological Society)

Original paper

Jakub Plášil, Anthony R. Kampf, Jiří Sejkora, Jiří Čejka, Radek Škoda, Jaromír Tvrdý

Horákite, a new hydrated bismuth uranyl-arsenate-phosphate mineral from Jáchymov (Czech Republic) with a unique uranyl-anion topology

Journal of Geosciences, volume 63 (2018), issue 3, 265 - 276

DOI: http://doi.org/10.3190/jgeosci.267

Ardelean I, Cora S, Ioncu V (2006) Structural investigation of CuO-Bi₂O₃-B₂O₃ glasses by FT-IR, Raman and UV-VIS spectroscopies. J Optoelectron Adv Mater 8: 18430-1847

Astilleros JM, Pinto AJ, Gonçalves MA, Sánchez-Pastor N, Fernández-Díaz L (2013) In situ nanoscale observations of metatorbernite surfaces interacted with aqueous solutions. Environ Sci Technol 47: 2636-2644
http://doi.org/10.1021/es302781k

Bartlett JR, Cooney RP (1989) On the determination of uranium-oxygen bond lengths in dioxouranium(VI) compounds by Raman spectroscopy. J Molecul Struct 193: 295-300
http://doi.org/10.1016/0022-2860(89)80140-1

Blatov VA, Shevchenko AP, Proserpio DM (2014) Applied topological analysis of crystal structures with the program package ToposPro. Cryst Growth Des 14: 3576-3586
http://doi.org/10.1021/cg500498k

Brown ID (2002) The Chemical Bond in Inorganic Chemistry. The Bond Valence Model. Oxford University Press, Oxford, pp 1-278

Buck EC, Brown NR, Dietz NL (1995) Contaminant uranium phases and leaching at the Fernald Site in Ohio. Environ Sci Technol 30: 81-88
http://doi.org/10.1021/es9500825

Burns PC, Ewing RC, Hawthorne FC (1997) The crystal chemistry of hexavalent uranium: polyhedron geometries, bond-valence parameters, and polymerization of polyhedra. Canad Mineral 35: 1551-1570

Cantrell KJ, Deutsch WJ, Lindberg MJ (2011) Thermodynamic model for uranium release from Hanford Site Tank residual waste. Environ Sci Technol 45: 1473-1480
http://doi.org/10.1021/es1038968

Catalano JG, McKinley JP, Zachara JM, Heald SM, Smith SC, Brown GE (2006) Changes in uranium speciation through a depth sequence of contaminated Hanford sediments. Environ Sci Technol 40: 2517-2524
http://doi.org/10.1021/es0520969

Čejka J (1999) Infrared spectroscopy and thermal analysis of the uranyl minerals. In: Burns PC, Ewing RC (eds) Uranium: Mineralogy, Geochemistry and the Environment. Mineralogical Society of America and Geochemical Society Reviews in Mineralogy and Geochemistry 38: pp 521-622

Dal Bo F, Hatert F, Baijot M, Philippo S (2015) Crystal structure of arsenuranospathite from Rabejac, Lodève, France. Eur J Mineral 27: 589-597
http://doi.org/10.1127/ejm/2015/0027-2461

Demartin F, Diella V, Donzelli S, Gramaciolli CM, Pilati T (1991) The importance of accurate crystal structure determination of uranium minerals. I. Phosphuranylite KCa(H₃O)₃(UO₂)₇(PO₄)₄O₄.8H₂O. Acta Crystallogr B47: 439-466

Finch RJ, Murakami T (1999) Systematics and paragenesis of uranium minerals. In: Burns PC, Finch RJ (eds) Uranium: Mineralogy, Geochemistry and the Environment. Mineralogical Society of America and Geochemical Society Reviews in Mineralogy 38: pp 91-180

Frost RL, Čejka J, Sejkora J, Plášil J, Reddy BL, Keeffe EC (2011) Raman spectroscopic study of a hydroxy-arsenate mineral containing bismuth - atelestite, Bi₂O(OH)(AsO₄). Spectrochim Acta, Part A: 494-496
http://doi.org/10.1016/j.saa.2010.11.016

Gagné OC, Hawthorne FC (2015) Comprehensive derivation of bond-valence parameters for ion pairs involving oxygen. Acta Crystallogr B71: 562-578
http://doi.org/10.1107/S2052520615016297

Göb S, Gühring J-E, Bau M, Markl G (2013) Remobilization of U and REE and the formation of secondary minerals in oxidized U deposits. Amer Miner 98: 530-548
http://doi.org/10.2138/am.2013.4275

Gunter ME, Bandli BR, Bloss FD, Evans SH, Su SC, Weaver R (2004) Results from a McCrone spindle stage short course, a new version of EXCALIBR, and how to build a spindle stage. The Microscope 52: 23-39

Hloušek J, Plášil J, Sejkora J, Škácha P (2014) News and new minerals from Jáchymov, Czech Republic (2003-2014). Bull mineral-petrolog odd Nár Muz (Praha) 22: 155-181 (in Czech with English abstract)

Ilton ES, Zachara JM, Moore DA, McKinley JP, Eckberg AD, Cahill CL, Felmy AR (2010) Dissolution study of metatorbernite: thermodynamic properties and the effect of pH and phosphate. Environ Sci Technol 44: 7521-7526
http://doi.org/10.1021/es101619f

Kraus W, Nolze G (1996) POWDER CELL: a program for the representation and manipulation of crystal structures and calculation of the resulting X-ray powder patterns. J appl Crystallogr 29: 301-303
http://doi.org/10.1107/S0021889895014920

Krivovichev SV (2009) Graph theory applied to low dimensional structural units in inorganic oxysalts. In: Krivovichev SV (ed) Structural Crystallography of Inorganic Oxysalts. IUCr Monographs on Crystallography 22. Oxford University Press, Oxford, pp 6-93
http://doi.org/10.1093/acprof:oso/9780199213207.003.0002

Krivovichev SV (2010) Actinyl compounds with hexavalent elements (S, Cr, Se, Mo) - structural diversity, nanoscale chemistry, and cellular automata modeling. Eur J Inorg Chem 18: 2594-2603
http://doi.org/10.1002/ejic.201000168

Krivovichev SV (2012) Topological complexity of crystal structures: quantitative approach. Acta Crystallogr A68: 393-398
http://doi.org/10.1107/S0108767312012044

Krivovichev SV (2013) Structural complexity of minerals: information storage and processing in the mineral world. Mineral Mag 77: 275-326
http://doi.org/10.1180/minmag.2013.077.3.05

Krivovichev SV (2014) Which inorganic structures are the most complex? Angew Chem Int Ed Engl 53: 654-661
http://doi.org/10.1002/anie.201304374

Krivovichev SV (2016) Structural complexity and configurational entropy of crystals. Acta Crystallogr B72: 274-276
http://doi.org/10.1107/S205252061501906X

Krivovichev SV (2017) Hydrogen bonding and structural complexity of the Cu₃(AsO₄)(OH)₃ polymorphs (clinoclase, gilmarite): a theoretical study. J Geosci 62: 79-85
http://doi.org/10.3190/jgeosci.231

Krivovichev SV, Plášil J (2013) Mineralogy and crystallography of uranium. In: Burns PC, Sigmon GE (eds) Uranium: From Cradle to Grave. Mineralogical Association of Canada Short Courses 43: pp 15-119

Libowitzky E (1999) Correlation of O-H stretching frequencies and O-H···O hydrogen bond lengths in minerals. Monatsh Chem 130: 1047-1059
http://doi.org/10.1007/978-3-7091-6419-8_7

Locock AJ (2007) Trends in actinide compounds with the autunite sheet-anion topology. Zap Vser Mineral Obshchest 136: 115-137

Locock AJ, Burns PC (2003) The structure of hügelite, an arsenate of the phosphuranylite group, and its relationship to dumontite. Mineral Mag 67: 1109-1120
http://doi.org/10.1180/0026461036750146

Locock AJ, Burns PC, Flynn TM (2005) The role of water in the structures of synthetic hallimondite, Pb₂[(UO₂)(AsO₄)₂](H₂O)_n and synthetic parsonsite, Pb₂[(UO₂)(PO₄)₂](H₂O)_n, 0 <= n <= 0.5. Amer Miner 90: 240-246
http://doi.org/10.2138/am.2005.1705

Lussier AJ, Lopez RAK, Burns PC (2016) A revised and expanded structure hierarchy of natural and synthetic hexavalent uranium compounds. Canad Mineral 54: 177-283
http://doi.org/10.3749/canmin.1500078

Maher K, Bargar JR, Brown GE, Jr (2013) Environmental speciation of actinides. Inorg Chem 52: 3510−3532
http://doi.org/10.1021/ic301686d

Mandarino JA (1976) The Gladstone-Dale relationship - Part 1: derivation of new constants. Canad Mineral 14: 498-502

Mereiter K (1982) The crystal structure of walpurgite, (UO₂)Bi₄O₄(AsO₄)₂.2H₂O. Tschermaks Mineral Petrogr Mitt 30: 129-139
http://doi.org/10.1007/BF01082500

Nakamoto K (1986) Infrared and Raman Spectra of Inorganic and Coordination Compounds. J. Wiley and Sons, New York, pp 1-496

Ok KM, Baek J, Halasyamani PS, O’Hare D (2006) New layered uranium phosphate fluorides: syntheses, structures, characterizations, and ion-exchange properties of A(UO₂)F(HPO₄)·xH₂O (A = Cs⁺, Rb⁺, K⁺; x = 0-1). Inorg Chem 45: 10207-10214
http://doi.org/10.1021/ic061420d

Ondruš P, Veselovský F, Gabašová A, Hloušek J, Šrein V, Vavřín I, Skála R, Sejkora J, Drábek M (2003) Primary minerals of the Jáchymov ore district. J Czech Geol Soc 48: 19-147
Direct link

Petříček V, Dušek M, Palatinus L (2014) Crystallographic computing system JANA2006: general features. Z Kristallogr 229: 345-352
http://doi.org/10.1515/zkri-2014-1737

Piret P, Piret-Meunier J (1988) Nouvelle détermination de la structure cristalline de la dumontite Pb₂[(UO₂)₃O₂(PO4)₂]·5H₂O. Bull Minéral 111: 439-442
http://doi.org/10.3406/bulmi.1988.8090

Plášil J (2014) Oxidation-hydration weathering of uraninite: the current state-of-knowledge. J Geosci 59: 99-114
http://doi.org/10.3190/jgeosci.163

Plášil J (2017) A novel sheet topology in the structure of kamitugaite, PbAl[(UO₂)₅(PO₄)_2.38(AsO₄)_0.62O₂(OH)₂](H₂O)_11.5. J Geosci 62: 253-260
http://doi.org/10.3190/jgeosci.246

Plášil J (2018) Uranyl-oxide hydroxy-hydrate minerals: their structural complexity and evolution trends. Eur J Mineral 30: 237-251
http://doi.org/10.1127/ejm/2017/0029-2690

Plášil J, Sejkora J, Ondruš P, Veselovský F, Beran P, Goliáš V (2006) Supergene minerals in the Horní Slavkov uranium ore district, Czech Republic. J Czech Geol Soc 51: 149-158
http://doi.org/10.3190/JCGS.991

Plášil J, Sejkora J, Čejka J, Škoda R, Goliáš V (2009) Supergene mineralization of the Medvědín uranium deposit, Krkonoše Mountains, Czech Republic. J Geosci 54: 15-56
http://doi.org/10.3190/jgeosci.029

Plášil J, Škácha P, Sejkora J, Škoda R, Novák M, Veselovský F, Hloušek J (2017) Babánekite, Cu₃(AsO₄)₂∙8H₂O, from Jáchymov, Czech Republic - a new member of the vivianite group. J Geosci 62: 261-270
http://doi.org/10.3190/jgeosci.248

Pouchou JL, Pichoir F (1985) “PAP” (φρZ) procedure for improved quantitative microanalysis. In: Armstrong JT (ed) Microbeam Analysis. San Francisco Press, San Francisco, pp 104-106

Roh Y, Lee SR, Choi S-K, Elless MP, Lee SY (2000) Physicochemical and mineralogical characterization of uranium-contaminated soils. Soil Sediment Contam 9: 463-486
http://doi.org/10.1080/10588330091134356

Sejkora J, Čejka J, Hloušek J, Šrein V, Novotná M (2002) Phosphatian walpurgite from Smrkovec, the Slavkovský Les Mts. (the Czech Republic): its description and physico-chemical characteristics. Neu Jb Mineral, Mh 8: 353-367
http://doi.org/10.1127/0028-3649/2002/2002-0353

Sejkora J, Čejka J, Hloušek J, Novák M, Šrein V (2004) Phosphowalpurgite, the (PO₄)- dominant analogue of walpurgite, from Smrkovec, Slavkovsky Les Mountains, Czech Republic. Canad Mineral 42: 963-972
http://doi.org/10.2113/gscanmin.42.4.963

Sejkora J, Čejka J, Kolitsch U (2008) Uranosphaerite from Horní Halže near Měděnec (Krušné hory Mountains, Czech Republic): description and vibrational characteristics. Neu Jb Mineral, Abh 185: 91-98
http://doi.org/10.1127/0077-7757/2008/0116

Serezhkina LB, Trunov VK, Kholodkovskaya LN, Kuchumova, NV (1990) Crystalline-structure of KUO₂CrO₄(OH)∙1.5H₂O. Koordinats Khim 16: 1288-1291

Serezhkina LB, Peresypkina EV, Virovets AV, Pushkin DV, Verevkin AG (2010) Synthesis and structure of Cs[UO₂(SeO₄)(OH)]∙nH₂O (n = 1.5 or 1). Kristallografija 55: 416-420
http://doi.org/10.1134/S1063774510030041

Shannon RD (1976) Revised effective ionic radii and systematic studies of interatomic distances in halides and chalcogenides. Acta Cryst A32: 751-767
http://doi.org/10.1107/S0567739476001551

Sheldrick GM (2015) SHELXT - integrated space-group and crystal-structure determination. Acta Crystallogr A71: 3-8
http://doi.org/10.1107/S2053273314026370

Siidra O, Zenko DS, Krivovichev SV (2014) Structural complexity of lead silicates: crystal structure of Pb₂₁[Si₇O₂₂]₂[Si₄O₁₃] and its comparison to hyttsjöite. Amer Miner 99: 817-823
http://doi.org/10.2138/am.2014.4723